Chocolate Chip Cookie Dough Cupcakes — Soft, Sweet & Irresistible

Posted on February 2, 2026

Close-up of a Chocolate Chip Cookie Dough Cupcakes split open to reveal a gooey cookie-dough center studded with mini chocolate chips, on a cooling rack.

If you’re hunting for a showstopper dessert, Chocolate Chip Cookie Dough Cupcakes hit every note: tender cake, a hidden cookie dough center, and that satisfying bite of chocolate. I spotted this combo on a bakery menu, set out to recreate it at home, and — spoiler — I now bake them on repeat. Cupcake aficionados, assemble.

Brief introduction — what these cupcakes are and why they work

These cupcakes combine two universal comforts: classic yellow cake and raw-style cookie dough tucked right into the top. The result? A cupcake that tastes like the best parts of a cookie and a cake in one forkful. They bake quickly, travel well, and always spark “where did you buy these?” comments. Want to nab a place on someone’s favorites list? Make these.


Why you’ll love this recipe

  • It’s fast to assemble but feels decadent.
  • The cookie dough center gives you textural contrast — gooey, slightly chewy, and chocolate-studded.
  • They hold up well for parties and make great Cupcakes Rellenos (that’s “filled cupcakes” for the Spanish-speaking crowd).
  • Kids love them, adults swoon, and they photograph beautifully for your dessert board or blog.

Curious about the science? The cake provides structure; the frozen cookie dough ball stays soft in the center while the cake cooks around it. Magic = controlled temperature + timing.


The Key Ingredients (and Why You Need Them)

Below I list the main ingredients (no amounts here — the printable card has those). I’ll explain what role each plays so you understand how and why to tweak things.

  • All-purpose flour — gives the cupcakes body. Use a spoon-and-level method for accurate measurement.
  • Leaveners (baking soda) — provides lift and a tender crumb.
  • Salt — brightens flavors; don’t skip it.
  • Butter + sugars (white + brown) — butter adds richness; brown sugar contributes moisture and a hint of caramel. That combo is key for cookie dough texture.
  • Eggs & vanilla — eggs provide structure and richness; vanilla boosts overall flavor.
  • Chocolate chips (mini works best) — the small size disperses evenly through cookie dough and cake. Think Chocolate Chip Cookie Dough in concentrated form.
  • Box yellow cake mix + water + oil + eggs — we use a yellow cake mix base for quick, consistent results that stay soft and tender. Don’t view the boxed mix as cheating — it’s a reliable foundation.

Want to tweak? Use higher-quality chocolate for a luxury bump, or swap some flour for cake flour if you want an ultra-delicate crumb.

Close-up of a Chocolate Chip Cookie Dough Cupcakes split open to reveal a gooey cookie-dough center studded with mini chocolate chips, on a cooling rack.Pin


How to Make It

This is the step-by-step you’ll want to paste into your recipe card. Keep paragraphs short and instructions punchy.

Make the cookie dough filling

  1. In a bowl, cream softened butter with both sugars until smooth.
  2. Add one egg and vanilla; beat until combined.
  3. Stir in the dry ingredients (flour, baking soda, pinch of salt) just until mixed — don’t overwork.
  4. Fold in miniature chocolate chips.
  5. Portion the dough into tablespoon-sized balls and place them on a baking sheet. Freeze these balls until solid (about 2 hours). Bold tip: Freezing prevents the dough from melting into the batter during baking.

Prepare the cupcake batter

  1. Preheat your oven to 350°F (175°C) and line a 24-cup muffin tin with paper liners.
  2. Lightly beat the specified eggs for the cake batter. Add cake mix, water, and oil. Beat on medium speed for about two minutes until smooth.
  3. Fill each liner about two-thirds full with cake batter. Drop a frozen cookie dough ball into the center of each filled cup, pressing down slightly so the dough nestles inside.
  4. Bake until a toothpick inserted into the cake portion (avoid the cookie dough) comes out clean — roughly 18–22 minutes depending on your oven. Let cupcakes cool in the pan for 10 minutes, then remove to a wire rack to cool completely.

Bold tip: Do not overbake — you want a moist cake around a soft cookie dough center.


Pro tips for perfect results

  • Freeze the dough balls thoroughly. If they aren’t rock-solid, the cookie will spread and change the cupcake texture.
  • Use mini chips. The smaller chips distribute through the dough and cake evenly — no giant clumps.
  • Room-temperature egg for dough vs. lightly beaten eggs for batter: the dough dough needs a cold center; the batter needs proper aeration.
  • Test one cupcake first if you’re changing pan size or oven — bake time may vary slightly.
  • Use high-quality vanilla. It makes a bigger difference than most folks expect.
    Bold tip: If your cupcake tops dome too much, reduce oven temperature by 25°F and add a minute or two to bake time for a more even top.

Variations to try

  • Brown-butter cookie dough: brown the butter for the cookie dough phase to add nutty depth.
  • Oatmeal cookie dough center: swap the cookie dough base for an oatmeal-cookie dough (add oats and cinnamon).
  • Peanut butter swirl: add a blob of peanut butter to the top of the dough ball before freezing for a PB surprise.
  • Chocolate-on-chocolate: use a chocolate cake mix instead of yellow for richer, fudgier results.
  • Mini versions: make bite-size Cookie Dough Cupcakes for parties — adjust baking time down to 10–12 minutes.
  • Puddings twist: add a tablespoon of instant vanilla pudding mix to the cake batter for extra moisture and a softer crumb — it’s sneaky good if you love Puddings textures.

These small swaps keep the base technique but let you riff creatively.


Best ways to serve

  • Serve at room temperature — the cookie center is best slightly warm but not piping hot.
  • Top with a dusting of powdered sugar, a drizzle of melted chocolate, or a small scoop of vanilla buttercream.
  • Make a dessert platter: pair cupcakes with fresh berries, espresso shots, or a small scoop of ice cream for a café-style serving.
  • For a party-ready move, pipe the filling with a small rosette of frosting and place a cookie crumble on top — Insta-ready.

Looking to impress guests? Offer a tiny tasting menu: plain, brown-butter, and PB-swirl versions so people can vote for their favorite.

Close-up of a Chocolate Chip Cookie Dough Cupcakes split open to reveal a gooey cookie-dough center studded with mini chocolate chips, on a cooling rack.Pin


Quick tips for storage and leftovers

  • Room temp: Store in an airtight container for up to 2 days. The cookie center will stay soft.
  • Refrigerator: Keep for up to 5 days; bring to room temp before serving.
  • Freezer: Wrap individually and freeze up to 2 months. Thaw overnight in the fridge, then bring to room temp. Rewarm for 5–8 minutes at 300°F if you like a slightly melty center.
    Bold tip: If you’ll freeze them, skip any fresh cream or delicate frosting until after thawing to keep texture perfect.

Frequently Asked Questions (FAQs)

Will raw flour in the cookie dough be safe to eat?

Raw flour can carry bacteria. For a safer edible dough, use heat-treated flour (toast in the oven briefly) or use pasteurized flour sold for no-bake recipes. Many bakers also use minimal-egg recipes or egg replacers for no-risk dough.

How do I stop cookie dough from sinking to the bottom?

Freeze the dough balls thoroughly and place them on batter rather than pushing them through. The frozen dough should remain centered as the cupcake bakes.

Can I make this gluten-free?

Yes. Use a gluten-free flour blend for the cookie dough and a gluten-free cake mix for the batter. Test bake one cupcake to set timing.

Why is my cookie dough still raw after baking?

That can happen if the dough is too large or your oven runs cool. Either reduce the size of dough balls or increase bake time slightly while watching the cake portion’s doneness.

Can I use homemade cake batter instead of box mix?

Absolutely. Use your favorite yellow cake recipe but watch bake time — homemade batters sometimes need a few extra minutes.


Serving ideas & occasions

  • Birthday parties: swap standard cupcakes for these and watch the excitement level spike.
  • Bake sales: they stand out visually and justify a premium price.
  • Bridal showers or baby showers: dress them in themed colors with light frosting.
  • Casual weekend baking: they’re fun to make with kids (let them roll cookie dough balls).

Want a themed board for your blog? Tag it under Cupcake Receptek or Yummy Sweets to reach international bakers and dessert lovers.


The social and cultural angle

Filled cupcakes have global appeal — from Cupcakes Rellenos in Spanish-speaking kitchens to viral dessert trends on social platforms. They pair wonderfully with nostalgic flavors (think chocolate chip cookie meets childhood cake) and modern flourishes (salted caramel drizzle, edible gold leaf). Call them Sweets Treats, call them art — they’re a universal crowd-pleaser.


Troubleshooting common problems

  • Flat cupcakes: too much batter, overmixing, or low leavening. Check measurements and don’t overbeat.
  • Top cracks: oven too hot. Lower temp slightly and bake a bit longer.
  • Cookie dough melting: not frozen solid. Freeze for a longer time or reduce dough size.
  • Uneven rise: rotate the pan in the oven halfway through baking for even heat.

Final thoughts — short and punchy wrap-up

These Chocolate Chip Cookie Dough Cupcakes deliver nostalgia and novelty in the same bite. They scream “treat” and are versatile, easy to scale, and ideal for both casual afternoons and fancier dessert tables. Want to be the host with the most? Bake these, and keep a secret stash — you’ll thank me later.

Follow me on Pinterest for daily new recipes.

Close-up of a Chocolate Chip Cookie Dough Cupcakes split open to reveal a gooey cookie-dough center studded with mini chocolate chips, on a cooling rack.Pin

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Close-up of a Chocolate Chip Cookie Dough Cupcakes split open to reveal a gooey cookie-dough center studded with mini chocolate chips, on a cooling rack.

Chocolate Chip Cookie Dough Cupcakes — Soft, Sweet & Irresistible

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  • Author: Jennifer
  • Prep Time: 20 minutes
  • Additional Time: 2 hours
  • Cook Time: 20 minutes
  • Total Time: 2 hours 40 minutes
  • Yield: 24 servings 1x
  • Category: Dessert

Description

I spotted these cookie-stuffed cupcakes on a bakery menu and just had to recreate them. They turned out fantastic — soft cake with a hidden cookie-dough center. If you love cupcakes, this one’s a winner.


Ingredients

  • All-purpose flour — 1½ cups
  • Baking soda — ¼ teaspoon
  • Sea salt — ¼ teaspoon
  • Unsalted butter, softened — ½ cup
  • Granulated sugar — ¼ cup
  • Packed brown sugar — ½ cup
  • Large egg — 1 (for the cookie dough)
  • Vanilla extract — 2 teaspoons
  • Mini semisweet chocolate chips — 1 cup
  • Yellow cake mix (boxed) — 1 (18.25 oz) package
  • Water — 1⅓ cups
  • Canola oil — ⅓ cup
  • Large eggs — 3 (for the cake batter)


Instructions

  1. In a medium bowl whisk together the flour, baking soda, and salt. Set this dry mix aside.
  2. In a separate bowl, cream the softened butter with the granulated and brown sugars until smooth using a hand or stand mixer. Add the single egg and the vanilla and beat until incorporated.
  3. Fold the dry ingredients into the butter-sugar mixture just until combined. Stir in the miniature chocolate chips. Scoop tablespoon-sized portions of the dough, arrange them on a baking sheet, and freeze until they are firm (about two hours).
  4. Preheat the oven to 350°F (175°C). Line a 24-cup muffin tin with paper liners.
  5. Whisk the three eggs lightly in a large bowl, then add the boxed cake mix, water, and oil. Beat on medium speed for two minutes until the batter is smooth.
  6. Fill each liner about two-thirds full with the cake batter. Press one frozen cookie-dough ball into the center of each cup so it sits slightly below the surface.
  7. Bake for about 20 minutes, or until a toothpick inserted into the cake portion (avoiding the cookie dough) comes out clean. Let the cupcakes rest in the pan for 10 minutes, then transfer to a wire rack to cool completely.

Notes

  • Freeze the dough balls solid — this prevents them from melting into the batter while baking.
  • Don’t overmix the cookie dough or the batter; overworking develops gluten and can make the texture tough.
  • Use mini chocolate chips for even distribution through the dough and cake.

Nutrition

  • Calories: 256
  • Fat: 13g
  • Carbohydrates: 34g
  • Protein: 3g

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